correa::PyPolygon Class Reference

#include <correa_bindings.h>

Public Member Functions
	PyPolygon (bool test, std::string file_path, std::vector< double > focal_point, bool scale_by_area, double convert_to_microns_factor)
	PyPolygon (std::string file_path, bool clean_points, bool scale_by_area, double convert_to_microns_factor)
	PyPolygon (std::string file_path, std::string focal_path, bool clean_points, bool scale_by_area, double convert_to_microns_factor)
	PyPolygon (std::string file_path, std::vector< double > focal_point, bool clean_points, bool scale_by_area, double convert_to_microns_factor)
PersistenceDiagram	persistence_diagram ()
int	size ()
double	length ()
double	area ()
auto	vertices ()
auto	ellipse_max ()
auto	ellipse_max_a ()
auto	ellipse_max_b ()
auto	ellipse_max_ratio ()
auto	ellipse_min ()
auto	ellipse_min_a ()
auto	ellipse_min_b ()
auto	ellipse_min_ratio ()
auto	ellipse_lsq ()
auto	ellipse_lsq_a ()
auto	ellipse_lsq_b ()
auto	ellipse_lsq_ratio ()
auto	willmore ()
void	convertPixelsToMicrometers (double scale)
auto	originalArea ()

Public Attributes
Polygon	polygon

Friends
ostream &	operator<< (ostream &out, PyPolygon &P)
std::vector< double >	compare_polygons (PyPolygon poly1, PyPolygon poly2)
double	wasserstein_distance (PyPolygon poly1, PyPolygon poly2, int q)
double	frechet_distance (PyPolygon poly1, PyPolygon poly2)
double	max_ellipse_distance (PyPolygon poly1, PyPolygon poly2)
double	min_ellipse_distance (PyPolygon poly1, PyPolygon poly2)
double	lsq_ellipse_distance (PyPolygon poly1, PyPolygon poly2)
double	willmore_distance (PyPolygon poly1, PyPolygon poly2)
double	curv_ot_distance (PyPolygon poly1, PyPolygon poly2)

Detailed Description

Expose polygons to python

Member Function Documentation

area()

double correa::PyPolygon::area ( )

inline

Returns

length of the polygon

convertPixelsToMicrometers()

void correa::PyPolygon::convertPixelsToMicrometers ( double scale )

inline

Convert polygon coordinates from pixels to micrometers using the given scale factor

Parameters

scale

the scale factor to convert pixels to micrometers

ellipse_lsq()

auto correa::PyPolygon::ellipse_lsq ( )

inline

Returns

parameters (major axis, minor axis, ratio) of the least squared ellipse

ellipse_lsq_a()

auto correa::PyPolygon::ellipse_lsq_a ( )

inline

Returns

major axis of least square ellipse

ellipse_lsq_b()

auto correa::PyPolygon::ellipse_lsq_b ( )

inline

Returns

minor axis of least square ellipse

ellipse_lsq_ratio()

auto correa::PyPolygon::ellipse_lsq_ratio ( )

inline

Returns

ratio axis of least square ellipse

ellipse_max()

auto correa::PyPolygon::ellipse_max ( )

inline

Returns

parameters (major axis, minor axis, ratio) of the maximum inscribed ellipse

ellipse_max_a()

auto correa::PyPolygon::ellipse_max_a ( )

inline

Returns

major axis of maximum inscribed ellipse

ellipse_max_b()

auto correa::PyPolygon::ellipse_max_b ( )

inline

Returns

minor axis of maximum inscribed ellipse

ellipse_max_ratio()

auto correa::PyPolygon::ellipse_max_ratio ( )

inline

Returns

ratio of maximum inscribed ellipse

ellipse_min()

auto correa::PyPolygon::ellipse_min ( )

inline

Returns

parameters (major axis, minor axis, ratio) of the minimum inscribing ellipse

ellipse_min_a()

auto correa::PyPolygon::ellipse_min_a ( )

inline

Returns

major axis of minimum inscribing ellipse

ellipse_min_b()

auto correa::PyPolygon::ellipse_min_b ( )

inline

Returns

minor axis of minimum inscribing ellipse

ellipse_min_ratio()

auto correa::PyPolygon::ellipse_min_ratio ( )

inline

Returns

ratio axis of minimum inscribing ellipse

length()

double correa::PyPolygon::length ( )

inline

Returns

length of the polygon

originalArea()

auto correa::PyPolygon::originalArea ( )

inline

Returns

original area of the polygon

persistence_diagram()

PersistenceDiagram correa::PyPolygon::persistence_diagram ( )

inline

Returns

persistence diagram of the radial function from the center.

size()

int correa::PyPolygon::size ( )

inline

Returns

persistence diagram of the radial function from the center in a format for Python.

number of vertices in the polygon

vertices()

auto correa::PyPolygon::vertices ( )

inline

Returns

std::vector<std::vector<double>> of vertices of the polygon

willmore()

auto correa::PyPolygon::willmore ( )

inline

Returns

Willmore energy of the polygon

Friends And Related Symbol Documentation

operator<<

ostream & operator<< ( ostream & out, PyPolygon & P )

friend

print information about the polygon

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The documentation for this class was generated from the following file:

• correa_bindings.h